Kidney Stones, Kidney Function, Kidney Disease

Glomerular filtration is the main life sustaining kidney function, and kidney stones can cause enough damage to lower it. Usually the reduction is very modest, but sometimes stones can cause kidney failure. This means, like all diseases, stones are best prevented as early and as completely as possible.

This ‘just the facts’ version tells about what filtration is, how physicians measure it, how much kidney stones lower it, and how often that occurs.

Two longer articles give the details. One is comprehensive. The other focuses on only kidney disease, but is long.

Much of this text is redacted from the other two articles. I left out pictures, data, and links to PubMed to emphasize the main points.

The featured painting is by You Si 游思 (b. 1954), based in Shanghai, China. He is the son of two artists who lived through the cultural revolution and paints in new ways. I think his work is gorgeous but could not find a serious biography or critical study, or any museums that show his work.

What Filtration Is

Our two kidneys are each made up of about one million nephron units. A nephron is a complete and complex structure that begins its function by filtering from blood plasma a clear solution of water and small molecules. That filtrate enters the long loopy tubule of the nephron that reabsorbs a vast fraction of water and salts back into the blood leaving behind only that destined for export out of the body.

The glomerulus, a tuft of capillaries nestled in a tiny cup that drains into its tubule, performs this filtration. So we name it glomerular filtration rate, or GFR.

Blood flow and pressure from the heart drive filtration, but kidneys can regulate its rate. The cells that line the tubules regulate what fractions of innumerable individual salts and small molecules are taken back or let go into the urine.

Filtration Keeps Us Alive

Filtration rids the blood plasma of metabolic wastes, like oxalate, and permits us to excrete the extra water, salt, and all other materials we might eat or drink every day. Without filtration we need dialysis or transplantation to continue living. So this kidney function stands above all the others. When physicians speak of kidney function, they mean, and measure, filtration.

Filtration and Kidney Stones

Kidneys filter copious volumes of water and small molecules – like calcium, oxalate, citrate, phosphate, uric acid, sodium – hundreds of distinct materials. They then return most of this flood – 100 to 200 liters a day of water alone – back into the blood keeping behind only what they destine for export as urine.

Because kidneys filter such vast amounts, very subtle variations in what they take back into blood can load the urine with stone forming salts like calcium and oxalate, and cause stones. In other words, stones arise in significant measure because of subtle imbalances between filtration and reabsorption of key materials like calcium, oxalate, citrate, and water itself.

The filtering system, though powerful, is delicate. Through obstruction, infection, loss of one kidney, or surgical trauma stones can injure it. Such injuries reduce the ability of kidneys to protect the body, and when severe can lead to chronic kidney disease and even need for dialysis or transplantation.

How We Measure Glomerular Filtration

Serum Creatinine

Muscles make creatinine steadily and send it into the blood. Like almost all small molecules, kidneys filter it. Serum creatinine therefore reflects the balance between muscle production and filtration. When filtration falls serum creatinine rises. It is like your golf score – bad day, higher score. Serum creatinine gauges filtration adequately enough for clinical practice. But because kidneys not only filter creatinine but also secrete it from blood into urine, creatinine overestimates true filtration.


To get a better estimate, scientists compared serum creatinine to true GFR in reasonably large populations and calculated the best fit between them using regression techniques. The resulting regression equation gives estimated GFR, or eGFR, from serum creatinine, age, sex, and race. This highly derived index dominates medical practice. When physicians speak of reduced kidney function they mean reduced eGFR.

Kidney Function in  Stone Formers

Average Function is modestly reduced

Our Own Patients

In our own patients, we found that stone formers have lower kidney function than normal people. The common idiopathic calcium stone formers are just slightly low. Likewise for those with primary hyperparathyroidism. But kidney function is reduced by about 20% in people who make stones because of bowel disease or diseases like renal tubular acidosis or cystinuria. Uric acid and struvite stone formers have even greater reductions.

US Health Surveys

The national NHANES data survey results showed modestly reduced kidney function in overweight people who had a history of stones. Women who formed stones had increased risk for serious chronic kidney disease, and even dialysis.

Olmsted County 

This community uses Mayo Clinic for care so records are very complete. A history of kidney stones increased risk of CKD and eventual dialysis.

Large Reviews

Two extensive reviews of all published studies – not just the few I mentioned – concluded that where ever looked for, stone forming raised risk of high blood pressure, serious chronic kidney disease, and even dialysis.

Though Increased, Kidney Disease Rates are Not High

Stones raise the risk of serious kidney disease from the very low levels in the general population to higher though still low levels. The vast majority of stone formers do well and never have problems that require special kidney care. Only rarely do stone formers need dialysis. But they can come to need such care more frequently than people who never formed a stone.

The message is obvious. Stone recurrence should be minimized through prevention efforts. Physicians who practice stone prevention need to measure eGFR appropriately, and if it begins to fall take proper steps to mitigate the causes of that fall.

Obstruction from stones always needs prompt, skilled, urological care that minimizes risk and trauma from surgery. Because silent obstruction can destroy a kidney, any symptoms that suggest new stone passage deserve urological attention.

High Blood Pressure

The NHANES and Olmsted County data show that a history of stones raises risk of elevated blood pressure. Loss of kidney function, even subtle, could raise blood pressure, and increased blood pressure can harm kidneys and reduce GFR. Unlike significant kidney disease, high blood pressure is easily treated to prevent strokes, heart disease, and kidney failure. But high blood pressure commonly escapes diagnosis and adequate treatment.

This means kidney stone prevention clinics are high blood pressure clinics, or at least a common place where high blood pressure can be first detected. All stone formers need to know their blood pressure and seek care if it is elevated.

Bottom Line

Stones are a painful and recurrent chronic disease that kidneys generally tolerate with at most a modest amount of injury and function loss. But compared to people without stones, those who make them have measurably increased risk of high blood pressure and loss of kidney function. Years of study have made clear that this disease demands attentive treatments aimed at prevention, and that surgeons who manage stones do everything possible to preserve kidney tissue.

274 Responses to “Kidney Stones, Kidney Function, Kidney Disease”

  1. Geri Snoke

    I am a 68 yo woman with no history of hypertension, diabetes, or kidney disease. 2 months ago my doctor got labs because I was suddenly losing my hair, and in addition to finding hypothyroidism my serum creatinine was elevated at 1.31. Because my FBS and lipid profile were a little high, and I didn’t know if there might be an autoimmune component to my hypothyroidism, I embarked on a serious dietary change and increased my fluid intake in case I was dehydrated. Because I’ve had chronic GI issues with severe constipation, leaky gut, reflux, and possible SIBO, I decided to limit grains, lectins, gluten, dairy, carbs and started adding numerous supplements, etc. I had follow-up labs 2 weeks ago and my creatinine was now 1.55 and BUN 30. I have been trying ever since to get an appointment with a nephrologist ASAP, concerned I might have some kind of acute kidney injury, but am not able to see one until 8/8/22. I do have a history of gross hematuria quite a few years ago, and was found to have multiple stones on imagining, but I have never passed a stone. I was never advised about diet or stone prevention and pretty much forgot about it. From my recent research I’m thinking I caused myself to have hyperoxalosis/hyperoxaluria from a leaky gut combined with excessive dietary oxalates (esp. tons of almonds and nuts) aggravated by supplements (such as high dose vitamin C). My main concern is whether there is an acute process going on that might be aggravated by having to wait 2 more weeks for an evaluation. I really have no symptoms, (except bouts of froth in my urine), and my temp and BP is fine. Have you seen acute/chronic oxalate poisoning from diet/supplements, or is something else more likely? Is it OK to wait 2 more weeks? Thanks so much.

    • Fredric L Coe, MD

      Hi Geri, My first concern would be a stone causing painless obstruction. High urine oxalate with kidney problems is possible but a lot more tenuous. I think an ultrasound or CT to rule our obstruction is very important. Perhaps your regular physician might want to consider this. Regards, Fred Coe

      • Martin wood

        Fredric Coe, MD,
        Hi, I just found your site, I left a comment for Geri snoke, I am in the middle of trying to move, but i want to start sharing ideas on your site, DR, Fredric I you seem to speak the truth, I am looking forward to getting to share ideas on here.
        Thankx Martin

      • Martin wood

        Fredric L Coe, MD, I want to say thankx for taking time out of your life and sharing your knowledge with us, as I said with the other comments I just found your site, I did a quick search about you, (YOU SIR) are a very impressive nephrologist / man@ 86!!

        I hope you will keep responding and sharing your knowledge with us? tomorrow I am going to see if you have a YouTube channel, if you do, I am going to subscribe to you.

      • Geri Snoke

        Thank you so much for your response. I absolutely concur that an US or CT is needed, and hope/assume the nephrologist will order one tomorrow. I guess I thought obstruction from a stone was less likely because it would have to be bilateral in order to cause the noted kidney damage (increase BUN, creatinine), and I didn’t seem to have pain or fever or decreased urine output etc. If it might be obstruction, an acute process, I’m clueless why the wait, when things could go south so quickly at any moment? But I’m just a scared patient. What do I know?! I will never take my kidneys for granted again.

    • Martin wood

      Hi Geri Snoke,
      I just found this site and read your comment, WOW, I have just experienced similar test results as you, I feel/believe that eating foods high in oxalates for so many years is the cause too,
      I am getting ready to start eating a almost 100% oxalate free life style, and no fruits, no veg’s, fruits and veg’s always hurt my kidneys, and make my urine test strips test for high creatinine and albumin, I believe from the high citric acids/malic acids and other acids in all of them fruits break my kidneys down, basically I guess I’m getting ready to start eating like a carnivore way, my body needs a little carbs though,

      I have a lot more to talk about if your interested in sharing each others diets? I ask you reply back or email me? Thankx

      • Fredric L Coe, MD

        Hi Martin, I answered her by pointing out that obstruction from one of her stones is far likelier to have reduced kidney function than diet induced increase of urine oxalate. In fact, the latter is almost never a cause of reduced kidney function. In your case I am not clear what may be the reason to avoid oxalate in foods, as you do not mention stones but rather albumin in the urine. The latter is not related to food oxalate per se. Regards, Fred Coe

  2. Juan Felipe Tejada

    Hi! I am 23 years old, I am from Colombia (English not so good), last year I had an eGFR of 88, this year I have it at 62, which is why I went to a nephrologist, and he sent me multiple medical exams, including an ultrasound of the urinary tract where they reported multiple microcalculi in both renal calyx with bilateral ectasia of the renal sinus. I had a normal urinalysis, and reduced kidney function. I do not have high blood pressure, diabetes, or any symptoms. I am an athlete and I am in good health. My concern is whether these stones may be the cause of the kidney damage and whether it may continue to progress. What measures should I take?

    • Fredric L Coe, MD

      Hi Juan Felipe, Stones in general reduce kidney function by obstructing the flow of urine. The US does not seem to suggest that but perhaps your physicians might want to consider a dynamic renal scan to assess the function of each kidney separately and also as a sensitive test for obstruction. Possibly you have a disease in which stones are associated with problems with kidney function. These are uncommon, and I do not have enough information to comment. Regards, Fred Coe

  3. Steph

    I am 42 and found out I have a 6×5 stone obstructing my ureter through an ED visit. My creatinine was 1.34 and my eGFR was 49. I have no prior Hx of kidney issues. They placed me on Flomax, which I am to take for a month and if the stone hasn’t passed I will have a procedure. My concern is with having the obstruction and decreased function for so long. Is this normal practice? Is it likely my function will return to normal?

    • Fredric L Coe, MD

      Hi Steph, I share your concern and have written about the topic on this site. I found that evidence as it is supports 2 – 3 weeks at the outermost for waiting, and frankly I think 2 weeks is more than long enough. AUA guidelines are far more generous, and urologists are absolutely right to follow them until and if they change. I have not published my work in peer reviewed journals as yet because it is only a review of published researches, but they all seem to say the same thing – don’t wait overlong as kidneys might incur damage. I emphasize that AUA guidelines are the US authority and I am not a surgeon. So I am speaking ex cathedra. Warm regards, Fred Coe

  4. resat

    hi.i had multiple stones in my left kidney since 2019 but not treated. last month i had a severe pain and went to hospital. after ultrasound check they found that i had a stone between 1,4-2,0 mm big and because of stone blockage grade 2 hydronephrosis. before the operation gfr was 45. then i had my stone removed with rirs and they planted double j stent. 3 days after surgery i went to the hospital again with severe pain. they said that stent migrated to bladder because of the stone. doctor broke the stone in two piece and one is still in my kidney and pushed the stent down. son i had another surgery. my gfr raised to 60 14 days after surgery. in my 24 hour urine test ptoein level is 850mg/dqy amd microalbuminia is 430mg/day with mic. erythrocyte 296 and leukocyte is +2 mic.leukocyte 20 . they will tqke out the stent next week. do you think does this rirs procedure made any harm to my kidney? and is protinuria because of surgery or lost of kidney function.

    • Fredric L Coe, MD

      Hi resat, The blood in the urine is what causes the high protein and albumin – have it checked when there is not blood. Of course improving drainage of one kidney increased overall kidney function but you have had some real trouble and prevention is urgent. Here is a good starting article. Regards, Fred Coe

  5. Mark

    I’m 62, lately GFR was 58. I am chronically dehydrated due to IBS watery stools and diarrhea about 80% of my BMs. Recent history of passing stones (last one one week prior to GFR results), with some blood prior to passing. Also, last five weeks training for half marathon and cross training 6 days per week, lots of sweating. Do any, or all, if these factors drop my GFR?

    • Fredric L Coe, MD

      Hi Mark, You seem a setup for uric acid or calcium oxalate monohydrate stones. Hydration is so crucial- have you considered sport drinks that contain replacement electrolytes?? The eGFR is an inexact estimate. Perhaps you should have blood drawn away from marathon training – at a time you are less dehydrated – and see if it is higher. Indeed dehydration lowers GFR as part of the physiology to conserve sodium. Altogether, given your history and stones and reduced GFR I would change things, but how to do this depends on the serum and 24 hour urine results, which are very important for you. Regards, Fred Coe


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